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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5433919_5434578_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5433919 - 5434578
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTGAA
U12 Branch Point Sequence:
GTGTGTATAAGC
Flanking Amino Acid:
PLMRQLYQYQRCMPQDTAFS
Intron Amino Acid Position:
1293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
61.6
0.29
1.2
55.4
42
Major PPT
73.7
0.53
0.8
65.3
36.2
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
43.8
-0.4
2.2
55.38
43.1

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006