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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5435484_5435879_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5435484 - 5435879
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TAGCTATTGACA
Flanking Amino Acid:
CNVEPELISKALQGLIETHS
Intron Amino Acid Position:
1393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
70.5
41.4
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
78.7
0.65
0.8
72
32.6
Minor 5ss
38.5
-1.3
2.9
49
47.2
Minor BPS
51.2
0.03
1.6
61.55
38.1

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006