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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5439567_5440040_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5439567 - 5440040
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTCAACTTAACT
Flanking Amino Acid:
EGARDSSTCKLDALVHRFIN
Intron Amino Acid Position:
1681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
87.5
0.84
0.6
81.1
31
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
72.5
0.78
1.5
85.99
39.7

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006