About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5440175_5440477_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5440175 - 5440477
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACCACTC
5'SS Class:
major
3'SS Sequence:
TTTGGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGGAAG
U12 Branch Point Sequence:
GAGGCTAGAGCT
Flanking Amino Acid:
LAVAHPILLLRHLPMIAALL
Intron Amino Acid Position:
1725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
61
44.1
Major BPS
41.2
-0.5
1.7
47.4
44.6
Major PPT
80.2
0.68
1
76.9
42.1
Minor 5ss
41
-1
3.4
59.9
44.6
Minor BPS
40
-0.6
1.8
51.8
42.4

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006