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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5440671_5440889_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5440671 - 5440889
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGAAAA
5'SS Class:
major
3'SS Sequence:
TACCCTTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTGTGGTTAACT
Flanking Amino Acid:
CLLSFIRLLLNYRKSSRHLA
Intron Amino Acid Position:
1790

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
69.6
36.5
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
78.3
0.64
0.8
76.2
31.9
Minor 5ss
31.5
-2.1
3.2
36.3
42
Minor BPS
58.2
0.34
2.4
83.45
43.9

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006