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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5441018_5441501_F

Intron Information:

Intron Rank:
40
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5441018 - 5441501
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TCTGTTCCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTAAAGTTAAAT
Flanking Amino Acid:
SFLQKHSDPLHDLSSDNSDL
Intron Amino Acid Position:
1832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
67.3
39.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78
0.63
0.8
70.2
36.5
Minor 5ss
52.2
0.08
2.7
73.6
36.7
Minor BPS
47.9
-0
2.3
72.39
43.5

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006