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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5441615_5442168_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5441615 - 5442168
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CTAAAACTAATA
Flanking Amino Acid:
LDRGSEEEKDEEAAAGSLPL
Intron Amino Acid Position:
1870

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.5
41.3
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
72.9
0.52
0.9
64.7
36.5
Minor 5ss
32.5
-2
3
38.1
40.9
Minor BPS
42.1
-0.6
2
52.29
39

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006