About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5442283_5443150_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5442283 - 5443150
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
ATTTCAGTCACC
Flanking Amino Acid:
KRLSRGQTVEDILEVLTDID
Intron Amino Acid Position:
1908

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
74.3
0.55
0.9
67.3
39.1
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
47
-0.2
2.6
69.86
41.5

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006