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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5443222_5443781_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5443222 - 5443781
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
CATCTTCTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TAATCCTTATTT
Flanking Amino Acid:
RRPEILSFFSTNLQKLMSSS
Intron Amino Acid Position:
1932

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
79.2
0.66
0.8
76.8
31.5
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
70.6
0.73
1.5
82.28
39

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006