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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5444097_5444389_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5444097 - 5444389
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTGG
5'SS Class:
major
3'SS Sequence:
CTCCCTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTCCCTTTCACA
Flanking Amino Acid:
NLPEYTLLCQEHAAVLLHRA
Intron Amino Acid Position:
1999

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
61.5
45.6
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
79.8
0.67
0.7
74.6
27.5
Minor 5ss
35.1
-1.7
3.4
46.9
48.5
Minor BPS
54.4
0.13
1.8
63.93
43

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006