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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5460807_5463986_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5460807 - 5463986
Intron Length:
3180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
GACCCCTCATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
72.3
37.7
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
80.3
0.68
0.7
72.7
32
Minor 5ss
33.2
-1.9
3.2
40.6
40.8
Minor BPS
47
-0.1
1.8
59.92
43.3

Associated Gene:

Gene:
MICALL2
Ensembl Gene ID:
ENSAPLG00000013527
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014128
5460758 - 5476349
15592