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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5464129_5465842_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5464129 - 5465842
Intron Length:
1714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
GCTCCCTTAGAA
Flanking Amino Acid:
YYNYFHGRSPIGGMAGIKRP
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
87.6
0.85
0.7
80.2
31.8
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
54.3
0.13
1.7
63.33
42.3

Associated Gene:

Gene:
MICALL2
Ensembl Gene ID:
ENSAPLG00000013527
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014128
5460758 - 5476349
15592