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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5466004_5466675_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5466004 - 5466675
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAAAT
5'SS Class:
major
3'SS Sequence:
CTTCTTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GCCTGCTCACCA
Flanking Amino Acid:
KPKETSPVTTKGVLAESGNI
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
74.8
35.1
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
81.5
0.71
0.7
76.2
26
Minor 5ss
37.3
-1.4
3.1
55.2
42.8
Minor BPS
43.5
-0.5
2.2
51.68
46.1

Associated Gene:

Gene:
MICALL2
Ensembl Gene ID:
ENSAPLG00000013527
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014128
5460758 - 5476349
15592