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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5467837_5468053_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5467837 - 5468053
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
ACTTTCAAAACT
Flanking Amino Acid:
LSFTGSSASSSGNFSPASSQ
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
94.9
1.01
0.5
91.6
19.6
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
53.4
0.18
1.9
74.59
42.3

Associated Gene:

Gene:
MICALL2
Ensembl Gene ID:
ENSAPLG00000013527
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014128
5460758 - 5476349
15592