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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5469151_5469470_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5469151 - 5469470
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAC
U12 Branch Point Sequence:
GGTTTCCTACCT
Flanking Amino Acid:
WRSRLKPVANKDQGGSKKPT
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
58.9
0.22
1.3
58.4
40
Major PPT
92.1
0.95
0.6
88.1
21.8
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
52
0.14
2
73.98
42.5

Associated Gene:

Gene:
MICALL2
Ensembl Gene ID:
ENSAPLG00000013527
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014128
5460758 - 5476349
15592