Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_551880_552388_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

551880 - 552388

Intron Length:

509

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAAGGGC

5'SS Class:

major

3'SS Sequence:

TGTTCTTTCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATGTTTTTATCT

Flanking Amino Acid:

EDWTAFQNSVRIIATCGELL

Intron Amino Acid Position:

468

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.3

0.45

1.1

57.1

41.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

83.9

0.76

0.8

76.7

37.4

Minor 5ss

29.4

-2.4

3.6

40.9

45.8

Minor BPS

63.3

0.5

1.6

77.33

39.7

Associated Gene:

Gene:

COG7

Ensembl Gene ID:

ENSAPLG00000012674

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013246

540657 - 563723

23067