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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_552506_553668_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
552506 - 553668
Intron Length:
1163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGTGC
5'SS Class:
major
3'SS Sequence:
TTTGCCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTCTCTCCATTT
Flanking Amino Acid:
LLKALKALFTKYTSDFTNTL
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.6
38.8
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
80.8
0.69
0.9
74.4
35
Minor 5ss
38.8
-1.3
3.3
50.1
40.9
Minor BPS
46
-0.2
2
68.41
43.2

Associated Gene:

Gene:
COG7
Ensembl Gene ID:
ENSAPLG00000012674
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013246
540657 - 563723
23067