Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5540633_5541614_R

Intron Information:

Intron Rank:

142277

Intron Class:

major

Intron Phase:

Intron Coordinates:

5540633 - 5541614

Intron Length:

982

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAGGGTTT

5'SS Class:

major

3'SS Sequence:

AATTTCCCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

ATTTTCCCAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

70.4

42.5

Major BPS

79.7

0.74

79.6

35.6

Major PPT

78.2

0.63

0.9

71.2

34.8

Minor 5ss

40.8

-1

3.7

55.1

49.1

Minor BPS

56.6

0.29

1.8

79.17

36.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023895

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018149

5540440 - 5543157

2718