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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5559720_5562296_R

Intron Information:

Intron Rank:
140278
Intron Class:
major
Intron Phase:
Intron Coordinates:
5559720 - 5562296
Intron Length:
2577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACAAAT
U12 Branch Point Sequence:
AGTCCACTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
51.7
0.04
1.2
59.2
35.9
Major PPT
89.2
0.88
0.7
88
29.4
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
47.4
-0.2
1.9
61.79
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022841
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024795
5559492 - 5563669
4178