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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5562390_5563317_R

Intron Information:

Intron Rank:
140279
Intron Class:
major
Intron Phase:
Intron Coordinates:
5562390 - 5563317
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
ATAACTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
58.9
37
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
87.7
0.85
0.7
80.8
31.1
Minor 5ss
25.2
-2.9
3.3
33
42.3
Minor BPS
68.6
0.67
1.2
78.97
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022841
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024795
5559492 - 5563669
4178