Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_556343_558095_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

556343 - 558095

Intron Length:

1753

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCAGTCA

5'SS Class:

major

3'SS Sequence:

TCTGTTACCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

TTTTCTGTTACC

Flanking Amino Acid:

WHAQLQWATQVFKKPHEIVT

Intron Amino Acid Position:

269

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.6

0.39

1.1

58.9

36.3

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

75.3

0.57

0.9

69.3

35.6

Minor 5ss

29.9

-2.3

3.4

38.8

46.4

Minor BPS

0.2

2.3

78.32

37.8

Associated Gene:

Gene:

COG7

Ensembl Gene ID:

ENSAPLG00000012674

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013246

540657 - 563723

23067