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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_558219_558995_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
558219 - 558995
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTACCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
TTCTCCTTACCC
Flanking Amino Acid:
LLAYYYKCHKVQLVAVWQDL
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
77.2
0.61
0.8
70.1
30.6
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
75.2
0.77
1.6
82.24
38.5

Associated Gene:

Gene:
COG7
Ensembl Gene ID:
ENSAPLG00000012674
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013246
540657 - 563723
23067