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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5587832_5591466_R

Intron Information:

Intron Rank:
149173
Intron Class:
major
Intron Phase:
Intron Coordinates:
5587832 - 5591466
Intron Length:
3635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
ATTTTTGTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CATTATTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
67.5
39.4
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
81.8
0.72
0.9
77
36.7
Minor 5ss
36.4
-1.5
3
51.1
45.2
Minor BPS
59
0.36
1.5
72.28
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027755
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047862
5587699 - 5593443
5745