About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5588016_5590251_R

Intron Information:

Intron Rank:
149172
Intron Class:
major
Intron Phase:
Intron Coordinates:
5588016 - 5590251
Intron Length:
2236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTAAATCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
85.4
0.8
0.7
77.3
31.4
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
48.3
-0.1
2
67.17
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027755
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026468
5587699 - 5591159
3461