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Intron Name: Anas_platyrhynchos_platyrhynchos_15_559079_560757_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

559079 - 560757

Intron Length:

1679

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTCAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTTAATTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAA

U12 Branch Point Sequence:

TTTGTTTTAATT

Flanking Amino Acid:

IVAAFNSQSVDQAKMFVKVF

Intron Amino Acid Position:

200

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.2

77.9

38.6

Major BPS

72.1

0.55

1.2

63.7

43.9

Major PPT

73.5

0.53

75.4

38.6

Minor 5ss

30.5

-2.2

2.5

33.4

41.8

Minor BPS

74.3

0.84

1.2

86.64

33.8

Associated Gene:

Gene:

COG7

Ensembl Gene ID:

ENSAPLG00000012674

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013246

540657 - 563723

23067