About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5591524_5591812_R

Intron Information:

Intron Rank:
149174
Intron Class:
major
Intron Phase:
Intron Coordinates:
5591524 - 5591812
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GCTGACTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.2
85.3
32.2
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
73
0.52
0.9
67.8
32.3
Minor 5ss
35.7
-1.6
2.7
45.8
42.3
Minor BPS
50.6
0.1
2
69.33
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027755
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047862
5587699 - 5593443
5745