Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5618317_5619648_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5618317 - 5619648

Intron Length:

1332

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAAAC

5'SS Class:

strong_major

3'SS Sequence:

GTTCGGTGTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAC

U12 Branch Point Sequence:

TGGGTGTTAACT

Flanking Amino Acid:

RLDLVESRVQVWFQNRRAKW

Intron Amino Acid Position:

143

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

77.5

30.5

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

0.32

57.7

43.2

Minor 5ss

33.1

-1.9

42.8

44.4

Minor BPS

51.8

0.13

2.2

71.67

45.4

Associated Gene:

Gene:

UNCX

Ensembl Gene ID:

ENSAPLG00000022255

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036672

5616772 - 5621698

4927