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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5619395_5619648_R

Intron Information:

Intron Rank:
2
Intron Class:
major_hybrid
Intron Phase:
0
Intron Coordinates:
5619395 - 5619648
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTAAACGAG|C
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCCTAAACG
Flanking Amino Acid:
RLDLVESRVQPRVKN*
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
49.3
-0
1.7
56.7
42.4
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
77.8
0.73
1.7
83.33
37.2

Associated Gene:

Gene:
UNCX
Ensembl Gene ID:
ENSAPLG00000022255
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018894
5619192 - 5621698
2507