Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5619825_5620965_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5619825 - 5620965

Intron Length:

1141

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGCG

5'SS Class:

major

3'SS Sequence:

TCTGCCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTGAG

U12 Branch Point Sequence:

CTTCCAGGGAGC

Flanking Amino Acid:

SGDSQPFKLADSGDPDKESP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

63.4

41.5

Major BPS

47.4

-0.1

1.5

42.8

41.8

Major PPT

83.6

0.76

0.8

80.6

31.4

Minor 5ss

29.4

-2.4

3.5

38.7

46.6

Minor BPS

36.2

-1.1

2.3

48.99

41.2

Associated Gene:

Gene:

UNCX

Ensembl Gene ID:

ENSAPLG00000022255

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036672

5616772 - 5621698

4927

ENSAPLT00000018894

5619192 - 5621698

2507