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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_563031_563612_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
563031 - 563612
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTGGC
5'SS Class:
major
3'SS Sequence:
CTTTCTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGCCAC
U12 Branch Point Sequence:
GCAGCCACGACT
Flanking Amino Acid:
QVLLLANPHKVPIRLRYKLT
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
65.3
40.3
Major BPS
42.9
-0.4
1.2
45.5
37.5
Major PPT
77
0.61
0.7
70.1
30.9
Minor 5ss
33.7
-1.9
3.4
43
38.7
Minor BPS
44.4
-0.3
1.9
58.06
44.5

Associated Gene:

Gene:
GGA2
Ensembl Gene ID:
ENSAPLG00000012336
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012862
562920 - 576225
13306
Gene:
COG7
Ensembl Gene ID:
ENSAPLG00000012674
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013246
540657 - 563723
23067