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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5633171_5635212_F

Intron Information:

Intron Rank:
135879
Intron Class:
major
Intron Phase:
Intron Coordinates:
5633171 - 5635212
Intron Length:
2042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
GCAGAATAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
85.7
0.8
0.8
84.9
29.9
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
41
-0.6
2
47.03
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023173
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023199
5632459 - 5637762
5304