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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_564332_565253_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
564332 - 565253
Intron Length:
922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTATCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATTT
Flanking Amino Acid:
IFVPLISITPSDICPLTVYD
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
68.8
36.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.5
0.6
1
73.6
36.7
Minor 5ss
34.2
-1.8
3.1
38.1
40.6
Minor BPS
68.8
0.67
1.6
82.89
39.2

Associated Gene:

Gene:
GGA2
Ensembl Gene ID:
ENSAPLG00000012336
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012862
562920 - 576225
13306