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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5645778_5646405_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5645778 - 5646405
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GGTGTGTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GACTTCTAATCT
Flanking Amino Acid:
DHKCGSAYKKNVQVPVCPLC
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
29.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
65.4
0.35
1
61.7
44.5
Minor 5ss
43.2
-0.7
2.7
54.4
36.6
Minor BPS
48.6
-0
1.9
65.08
45.4

Associated Gene:

Gene:
ZFAND2A
Ensembl Gene ID:
ENSAPLG00000013353
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013930
5644933 - 5646897
1965