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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_566732_566981_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
566732 - 566981
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGTAAG
5'SS Class:
major
3'SS Sequence:
GCATCTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CTTCCTGTAATT
Flanking Amino Acid:
SSCLLEEELIGLSNSPGLQK
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
71.7
39.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
71
0.47
0.9
69.2
36.7
Minor 5ss
37.5
-1.4
2.4
42.3
44.5
Minor BPS
56.3
0.28
2
76.64
40.8

Associated Gene:

Gene:
GGA2
Ensembl Gene ID:
ENSAPLG00000012336
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012862
562920 - 576225
13306