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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_567144_567445_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
567144 - 567445
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGG
5'SS Class:
major
3'SS Sequence:
GCTTTTTCCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTCTCTTTAACT
Flanking Amino Acid:
GSVTGLSDAPACRPAPRRMK
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.7
44.4
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
69.6
0.44
1
70.5
34.1
Minor 5ss
31
-2.2
3.2
39.7
45.9
Minor BPS
87.8
1.26
0.9
95.57
31.2

Associated Gene:

Gene:
GGA2
Ensembl Gene ID:
ENSAPLG00000012336
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012862
562920 - 576225
13306