Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_567566_568333_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

567566 - 568333

Intron Length:

768

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTTTCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGTGCAA

U12 Branch Point Sequence:

TTGGGTGCAAGT

Flanking Amino Acid:

SETVDDDDALAEILQANDKL

Intron Amino Acid Position:

275

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

67.3

36.7

Major BPS

43.2

-0.4

1.5

49.1

46.3

Major PPT

86.7

0.83

0.7

31.9

Minor 5ss

32.2

-2

3.4

43.3

Minor BPS

35.5

-1

2.5

54.76

47.6

Associated Gene:

Gene:

GGA2

Ensembl Gene ID:

ENSAPLG00000012336

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012862

562920 - 576225

13306