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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_568416_569239_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
568416 - 569239
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATTCT
5'SS Class:
major
3'SS Sequence:
TTTCCTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
TGACACAAAACA
Flanking Amino Acid:
LAKSDHETLQNLFQRCEKLR
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
74.7
36.3
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
84.6
0.78
0.6
84.6
23.1
Minor 5ss
40.8
-1
3.2
59
45.7
Minor BPS
44.2
-0.4
2
57.13
41.1

Associated Gene:

Gene:
GGA2
Ensembl Gene ID:
ENSAPLG00000012336
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012862
562920 - 576225
13306