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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5693810_5718188_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5693810 - 5718188
Intron Length:
24379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ACTACTTTTACT
Flanking Amino Acid:
STDILLCCTSRKLVTSREDT
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.2
80.7
33.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
37.4
-1.4
2.6
43.1
36.9
Minor BPS
60.6
0.41
1.7
74.86
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001046
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001030
5692764 - 5740415
47652