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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_570093_571167_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
570093 - 571167
Intron Length:
1075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCGCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TGTTACTGACCT
Flanking Amino Acid:
IFDTDEEKSKLLARLLKSSH
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
74.9
0.56
0.8
68.3
32.1
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
55.6
0.26
2
79.08
42.4

Associated Gene:

Gene:
GGA2
Ensembl Gene ID:
ENSAPLG00000012336
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012862
562920 - 576225
13306