About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5739346_5748322_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5739346 - 5748322
Intron Length:
8977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTATT
5'SS Class:
major
3'SS Sequence:
TTTGTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTTTATTTAAAT
Flanking Amino Acid:
MEEASLLAPQETDEEDLTPE
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
82
38.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
46.1
-0.4
2.9
68.9
41.7
Minor BPS
66.4
0.59
1.6
82.06
39.2

Associated Gene:

Gene:
C7orf50
Ensembl Gene ID:
ENSAPLG00000026748
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046538
5739130 - 5774913
35784