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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_574085_574569_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
574085 - 574569
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAG
U12 Branch Point Sequence:
TGTTTGGTACCG
Flanking Amino Acid:
QEMEALHALTVLEMCVNNCG
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
36.6
Major BPS
60.8
0.27
1.6
71.4
45.1
Major PPT
89
0.88
0.7
85
29.8
Minor 5ss
37.5
-1.4
3.3
56.3
41.9
Minor BPS
40.7
-0.8
2.7
54.89
46.5

Associated Gene:

Gene:
GGA2
Ensembl Gene ID:
ENSAPLG00000012336
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012862
562920 - 576225
13306