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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_574646_575292_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
574646 - 575292
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCGG
5'SS Class:
major
3'SS Sequence:
TGTTGCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
GTTGTCTGACTT
Flanking Amino Acid:
FCEQLKADTAGPSLALRLLA
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
55.2
49
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
75
0.56
0.9
66
40.8
Minor 5ss
29.7
-2.3
3.2
30.3
42.8
Minor BPS
48.8
-0
1.8
68.72
42.7

Associated Gene:

Gene:
GGA2
Ensembl Gene ID:
ENSAPLG00000012336
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012862
562920 - 576225
13306