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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5748496_5769901_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5748496 - 5769901
Intron Length:
21406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATT
Flanking Amino Acid:
GSELALAYLTSWSKNPEEWK
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.6
0.73
0.8
77
36.7
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
78.1
0.96
1
86.75
33.6

Associated Gene:

Gene:
C7orf50
Ensembl Gene ID:
ENSAPLG00000026748
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047275
5651077 - 5774913
123837
ENSAPLT00000046538
5739130 - 5774913
35784
ENSAPLT00000026297
5748269 - 5791583
43315
ENSAPLT00000021583
5650548 - 5774913
124366