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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5791787_5793858_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5791787 - 5793858
Intron Length:
2072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCTAT
U12 Branch Point Sequence:
CTACCACTGACG
Flanking Amino Acid:
MKISEKYGPVFT
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
61.5
0.29
1.3
62.1
44.1
Major PPT
78.3
0.64
0.7
73
25.2
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
44.7
-0.5
2
51.28
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011873
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038892
5790934 - 5800680
9747
ENSAPLT00000012388
5791781 - 5806425
14645