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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5791787_5795310_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5791787 - 5795310
Intron Length:
3524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GATCCCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
GATCCCTCCATA
Flanking Amino Acid:
HQKARQVPNEGVFFSSQELW
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
64.9
0.34
0.8
58
32.9
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
47.6
-0.2
1.9
59.45
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011873
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028395
5790933 - 5800680
9748