Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5794022_5795310_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5794022 - 5795310

Intron Length:

1289

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTACTGGAG

5'SS Class:

major

3'SS Sequence:

GATCCCTCCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAT

U12 Branch Point Sequence:

GATCCCTCCATA

Flanking Amino Acid:

PIFHHIQHGNGVFFSSQELW

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.7

0.25

1.1

49.6

Major BPS

72.3

0.55

1.2

80.7

33.2

Major PPT

64.9

0.34

0.8

32.9

Minor 5ss

27.7

-2.6

3.6

34.2

Minor BPS

47.6

-0.2

1.9

59.45

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011873

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038892

5790934 - 5800680

9747

ENSAPLT00000012388

5791781 - 5806425

14645