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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5795461_5795565_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5795461 - 5795565
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
AAATTCCAAACA
Flanking Amino Acid:
FLVGLIKSFKGGPFQLRCLN
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
80.8
0.69
0.9
72.8
42.2
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
48
-0.1
1.9
60.41
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011873
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038892
5790934 - 5800680
9747
ENSAPLT00000028395
5790933 - 5800680
9748
ENSAPLT00000012388
5791781 - 5806425
14645