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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5795724_5797224_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5795724 - 5797224
Intron Length:
1501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTCTATACCT
Flanking Amino Acid:
MLLLGSPFLHLFNFYPFLGF
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
74.4
36.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
91.7
0.94
0.5
92.2
18.3
Minor 5ss
36.9
-1.5
3
49.2
40.2
Minor BPS
65.2
0.55
1.9
88.67
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011873
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038892
5790934 - 5800680
9747
ENSAPLT00000028395
5790933 - 5800680
9748
ENSAPLT00000012388
5791781 - 5806425
14645