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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5799252_5799854_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5799252 - 5799854
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTGCT
5'SS Class:
major
3'SS Sequence:
GGTTGTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTTAA
U12 Branch Point Sequence:
AAGCCCTTAAGC
Flanking Amino Acid:
THFKGYFIPKGTTVIPLLTS
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
71.8
38
Major BPS
57.3
0.18
1.1
49.2
36.2
Major PPT
69.8
0.45
1
61.9
44.4
Minor 5ss
34.3
-1.8
3.4
51
45.4
Minor BPS
59.6
0.28
1.7
63.67
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011873
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038892
5790934 - 5800680
9747
ENSAPLT00000028395
5790933 - 5800680
9748
ENSAPLT00000012388
5791781 - 5806425
14645