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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5799997_5806303_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5799997 - 5806303
Intron Length:
6307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
TTTTGTGACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
KQKAFLPFSTDIVVPGDLTL
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
76.9
33.7
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
74
0.54
1
68.9
41.2
Minor 5ss
38.3
-1.3
2.9
48.8
46.9
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011873
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012388
5791781 - 5806425
14645